-
A computational framework to integrate high-throughput ‘-omics’ datasets for the identification of potential mechanistic links
HHY4QGQV111
-
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
CAV7IWQH111
-
A guide to human microbiome research: study design, sample collection, and bioinformatics analysis
LNS5ZXQ3111
-
A practical guide to amplicon and metagenomic analysis of microbiome data
X9J6M7LK111
-
A review of methods and databases for metagenomic classification and assembly
BEQRVNRR111
-
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
MB9FBKJG111
-
An evaluation of the accuracy and speed of metagenome analysis tools
PI4YKXU6111
-
Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics
2NSZCI85111
-
Benchmarking Metagenomics Tools for Taxonomic Classification
FYNEGBSM111
-
bioBakery: a meta'omic analysis environment
IQE5GHKF111
-
CAMISIM: simulating metagenomes and microbial communities
PPVUJI74111
-
Classification of metagenomic sequences: methods and challenges
ABFNJIHZ111
-
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
7MQQ7YA6111
-
DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
PNWDDJK5111
-
Detection of antibiotic-resistant bacteria and their resistance genes from houseflies
4CPMA4SQ111
-
DIAMOND+MEGAN: Fast and Easy Taxonomic and Functional Analysis of Short and Long Microbiome Sequences
CJXICBF6111
-
Expression patterns of elemental cycling genes in the Amazon River Plume
BLY2QZPI111
-
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
VGLAM8HQ111
-
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
HBEGHYEK111
-
GPMeta: a GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences
WB7R65KX111
-
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
5NAEEXT8111
-
MEGAN analysis of metagenomic data
JJVELYYB111
-
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
URHK52F3111
-
Metagenome fragment classification using N-mer frequency profiles
B7T83GXH111
-
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
WFXU59NN111
-
Metagenomic Quantification of Genes with Internal Standards
9TJS8MMG111
-
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
JWU7RLU3111
-
Microbiota alterations in proline metabolism impact depression
DVWEAQ54111
-
MOCAT2: a metagenomic assembly, annotation and profiling framework
IJPQDTSC111
-
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
DLGNL2I2111
-
Shotgun metagenomics, from sampling to analysis
YQGD4DZI111
-
Simulating Illumina metagenomic data with InSilicoSeq
G9NGJQ7Q111
-
Thermus thermophilus DNA can be used as internal control for process monitoring of clinical metagenomic next-generation sequencing of urine samples
VVBHAW7G111
-
Use of internal standards for quantitative metatranscriptome and metagenome analysis
B42C7S7D111
-
Evolution of the facial skin microbiome during puberty in normal and acne skin
RNMBYI4U111
-
Strain profiling and epidemiology of bacterial species from metagenomic sequencing
K53BBFVF111
-
Skani enables accurate and efficient genome comparison for modern metagenomic datasets
BXQMPFNX111
-
Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation
8C5T7IMF111
-
Precision identification of diverse bloodstream pathogens in the gut microbiome
8RUWWM6M111
-
Measurement of bacterial replication rates in microbial communities
FSEBD92Z111
-
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
EWX7C97D111
-
Identification of pathogen-specific and conserved genes expressed in vivo by an avian pathogenic Escherichia coli strain
C8CV3U2B111
-
Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains
LSL3G7NC111
-
A core genome approach that enables prospective and dynamic monitoring of infectious outbreaks
HQAJFZHN111
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
4WTJEJUD111
-
Mario: Interactive Tuning of Biological Analysis Pipelines Using Iterative Processing
LHIHQWT3111