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Literature 同步
  • 16s
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  • alignment
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  • The diversity and composition of the human gut lactic acid bacteria and bifidobacterial microbiota vary depending on age

    人体肠道乳酸菌和双歧杆菌微生物群的多样性和组成因年龄而异


  • Microbiota in Tumors: From Understanding to Application

    瘤内微生物


  • Conserved genetic basis for microbial colonization of the gut

    破解肠道细菌定植


  • Within-host evolution of a gut pathobiont facilitates liver translocation

    肠道致病菌的宿主内进化促进肝脏易位


  • Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics

    FMT定植追踪


  • Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

    来自宏基因组的超过 150,000 个基因组揭示了广泛未探索的人类微生物组多样性,这些基因组跨越了年龄、地理和生活方式


  • Dissecting the role of the human microbiome in COVID-19 via metagenome-assembled genomes

    通过宏基因组组装的基因组剖析人类微生物组在 COVID-19 中的作用


  • Deciphering the mobility and bacterial hosts of antibiotic resistance genes under antibiotic selection pressure by metagenomic assembly and binning approaches


  • The person-to-person transmission landscape of the gut and oral microbiomes

    肠道和口腔微生物组的人际传播情况


  • Compared to histamine-2 receptor antagonist, proton pump inhibitor induces stronger oral-to-gut microbial transmission and gut microbiome alterations: a randomised controlled trial

    与组胺 2 受体拮抗剂相比,质子泵抑制剂诱导更强的口腔到肠道微生物传递和肠道微生物组改变


  • Bacterial immunotherapy leveraging IL-10R hysteresis for both phagocytosis evasion and tumor immunity revitalization


  • Gut microbial genomes with paired isolates from China illustrate probiotic and cardiometabolic effects

    肠道微生物基因组及其配对分离株揭示了益生菌和心脏代谢效应


  • Microbiota translocation following intestinal barrier disruption promotes Mincle-mediated training of myeloid progenitors in the bone marrow

    肠道屏障破坏后的微生物群易位促进了骨髓中 Mincle 介导的髓系祖细胞训练


  • Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals


  • Mario: Interactive Tuning of Biological Analysis Pipelines Using Iterative Processing


  • A metagenome-wide association study of gut microbiota in type 2 diabetes


  • A core genome approach that enables prospective and dynamic monitoring of infectious outbreaks


  • Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains


  • Identification of pathogen-specific and conserved genes expressed in vivo by an avian pathogenic Escherichia coli strain


  • AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence


  • Measurement of bacterial replication rates in microbial communities


  • Precision identification of diverse bloodstream pathogens in the gut microbiome

    精确鉴定肠道菌群中多样的血液病原体


  • Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation


  • Skani enables accurate and efficient genome comparison for modern metagenomic datasets


  • Strain profiling and epidemiology of bacterial species from metagenomic sequencing


  • Evolution of the facial skin microbiome during puberty in normal and acne skin


  • Use of internal standards for quantitative metatranscriptome and metagenome analysis


  • Thermus thermophilus DNA can be used as internal control for process monitoring of clinical metagenomic next-generation sequencing of urine samples


  • Simulating Illumina metagenomic data with InSilicoSeq


  • Shotgun metagenomics, from sampling to analysis


  • Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies


  • MOCAT2: a metagenomic assembly, annotation and profiling framework


  • Microbiota alterations in proline metabolism impact depression


  • MetAMOS: a modular and open source metagenomic assembly and analysis pipeline


  • Metagenomic Quantification of Genes with Internal Standards


  • Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes


  • Metagenome fragment classification using N-mer frequency profiles


  • MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies


  • MEGAN analysis of metagenomic data


  • Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3


  • GPMeta: a GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences


  • Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle


  • Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4


  • Expression patterns of elemental cycling genes in the Amazon River Plume


  • DIAMOND+MEGAN: Fast and Easy Taxonomic and Functional Analysis of Short and Long Microbiome Sequences


  • Detection of antibiotic-resistant bacteria and their resistance genes from houseflies


  • DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data


  • Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software


  • Classification of metagenomic sequences: methods and challenges


  • CAMISIM: simulating metagenomes and microbial communities


  • bioBakery: a meta'omic analysis environment


  • Benchmarking Metagenomics Tools for Taxonomic Classification


  • Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics


  • An evaluation of the accuracy and speed of metagenome analysis tools


  • Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences


  • A review of methods and databases for metagenomic classification and assembly


  • A practical guide to amplicon and metagenomic analysis of microbiome data


  • A guide to human microbiome research: study design, sample collection, and bioinformatics analysis


  • A fast, lock-free approach for efficient parallel counting of occurrences of k-mers


  • A computational framework to integrate high-throughput ‘-omics’ datasets for the identification of potential mechanistic links


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