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Literature
同步
16s
A_needRead
alignment
b_bulkRNA-seq
alternative splicing
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Untitled
diet
A computational framework to integrate high-throughput ‘-omics’ datasets for the identification of potential mechanistic links
HHY4QGQV
111
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
CAV7IWQH
111
A guide to human microbiome research: study design, sample collection, and bioinformatics analysis
LNS5ZXQ3
111
A practical guide to amplicon and metagenomic analysis of microbiome data
X9J6M7LK
111
A review of methods and databases for metagenomic classification and assembly
BEQRVNRR
111
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
MB9FBKJG
111
An evaluation of the accuracy and speed of metagenome analysis tools
PI4YKXU6
111
Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics
2NSZCI85
111
Benchmarking Metagenomics Tools for Taxonomic Classification
FYNEGBSM
111
bioBakery: a meta'omic analysis environment
IQE5GHKF
111
CAMISIM: simulating metagenomes and microbial communities
PPVUJI74
111
Classification of metagenomic sequences: methods and challenges
ABFNJIHZ
111
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
7MQQ7YA6
111
DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
PNWDDJK5
111
Detection of antibiotic-resistant bacteria and their resistance genes from houseflies
4CPMA4SQ
111
DIAMOND+MEGAN: Fast and Easy Taxonomic and Functional Analysis of Short and Long Microbiome Sequences
CJXICBF6
111
Expression patterns of elemental cycling genes in the Amazon River Plume
BLY2QZPI
111
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
VGLAM8HQ
111
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
HBEGHYEK
111
GPMeta: a GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences
WB7R65KX
111
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
5NAEEXT8
111
MEGAN analysis of metagenomic data
JJVELYYB
111
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
URHK52F3
111
Metagenome fragment classification using N-mer frequency profiles
B7T83GXH
111
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
WFXU59NN
111
Metagenomic Quantification of Genes with Internal Standards
9TJS8MMG
111
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
JWU7RLU3
111
Microbiota alterations in proline metabolism impact depression
DVWEAQ54
111
MOCAT2: a metagenomic assembly, annotation and profiling framework
IJPQDTSC
111
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
DLGNL2I2
111
Shotgun metagenomics, from sampling to analysis
YQGD4DZI
111
Simulating Illumina metagenomic data with InSilicoSeq
G9NGJQ7Q
111
Thermus thermophilus DNA can be used as internal control for process monitoring of clinical metagenomic next-generation sequencing of urine samples
VVBHAW7G
111
Use of internal standards for quantitative metatranscriptome and metagenome analysis
B42C7S7D
111
Evolution of the facial skin microbiome during puberty in normal and acne skin
RNMBYI4U
111
Strain profiling and epidemiology of bacterial species from metagenomic sequencing
K53BBFVF
111
Skani enables accurate and efficient genome comparison for modern metagenomic datasets
BXQMPFNX
111
Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation
8C5T7IMF
111
Precision identification of diverse bloodstream pathogens in the gut microbiome
8RUWWM6M
111
Measurement of bacterial replication rates in microbial communities
FSEBD92Z
111
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
EWX7C97D
111
Identification of pathogen-specific and conserved genes expressed in vivo by an avian pathogenic Escherichia coli strain
C8CV3U2B
111
Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains
LSL3G7NC
111
A core genome approach that enables prospective and dynamic monitoring of infectious outbreaks
HQAJFZHN
111
A metagenome-wide association study of gut microbiota in type 2 diabetes
4WTJEJUD
111
Mario: Interactive Tuning of Biological Analysis Pipelines Using Iterative Processing
LHIHQWT3
111