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Literature 同步
  • 16s
  • A_needRead
  • alignment
  • b_bulkRNA-seq
    • alternative splicing
    • assembly
    • bulkRNA-seq article
    • review
  • b_scRNA-seq
    • cell type annotation
    • cell-cell communication
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  • book
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    • WGBS
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  • metagenomic
    • assembly
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    • zh
  • miRNA
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    • a_mendely
      • databases
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      • 16S
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    • Transcriptomics Metabolomics
  • tools
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  • Untitled
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  • The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes


  • Roary: rapid large-scale prokaryote pan genome analysis


  • Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq


  • Identification of mutations in laboratory evolved microbes from next-generation sequencing data using breseq


  • Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

    Mauve:通过重排实现保守基因组序列的多重比对


  • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome


  • Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown


  • TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions


  • TopHat: discovering splice junctions with RNA-Seq


  • TopHat-Fusion: an algorithm for discovery of novel fusion transcripts


  • STAR: ultrafast universal RNA-seq aligner


  • Scaling read aligners to hundreds of threads on general-purpose processors


  • Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3N


  • Mapping short DNA sequencing reads and calling variants using mapping quality scores


  • HISAT: a fast spliced aligner with low memory requirements


  • Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype


  • Fast gapped-read alignment with Bowtie 2


  • Fast and accurate short read alignment with Burrows-Wheeler transform


  • Fast and accurate long-read alignment with Burrows-Wheeler transform


  • Comparison of Short-Read Sequence Aligners Indicates Strengths and Weaknesses for Biologists to Consider


  • Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM


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