链接: https://pan.baidu.com/s/1GuAKfQ5n2K6NVyXvZWWidQ?pwd=0000 提取码: 0000
--来自百度网盘超级会员v3的分享

wget -O transcriptomics.zip https://bioinfo.online/pay/transcriptomics.55fe0636-c9f9-4300-852e-14b3b9c86f3b.zip
&& unzip transcriptomics.zip
&& rm transcriptomics.zip

ch_input = Channel2.fromApi(params.workflowId)

web{
    url="http://192.168.10.177:30000/service-platform/sample-analysis/get-by-workflow-id"
    authorize="ADMIN-TEMPLATE"
}

LimeSurvey
CatInHat
<>
https://www.jianshu.com/p/cd0c2b137bc0
code server: https://blog.csdn.net/bf96163/article/details/129012833
https://openjfx.cn/
lims: https://gitee.com/guotong520/lims
https://www.semanticscholar.org/paper/A-Novel-E3-Probiotics-Formula-Restored-Gut-and-Gut-Choy-Chan/93c17a7964522c00f6a0d857b6777d276a68e19f
pdf https://github.com/Stirling-Tools/Stirling-PDF
https://help.aliyun.com/zh/edas/developer-reference/implement-load-balancing?spm=a2c4g.11186623.0.0.10ae67a5nPURFq

http://192.168.0.178:8787/
https://jeecg.com/doc/demo
https://cmdcolin.github.io/awesome-genome-visualization/?language=&tag=&platform=&latest=true
https://medium.com/testable-io/packaging-java-applications-beware-of-one-jar-a2f5ee116f48
monica
https://gohugo.io/
https://www.youtube.com/watch?v=ftlZ0oeXYRE&t=13s

https://ttsmaker.com/zh-cn
https://ai.invideo.io/
https://ttsmaker.cn/?s=com
https://pytorch.org/audio/main/tutorials/forced_alignment_tutorial.html

https://zhuanlan.zhihu.com/p/633870298
https://dashscope.aliyun.com/?spm=5176.13379658.J_9504402170.3.6b091c025R9kHJ
https://pubmed.ncbi.nlm.nih.gov/30661756/

ide.browser.jcef.sandbox.enable = false

https://blog.csdn.net/qq_26898033/article/details/133696108
/ssd2/software/idea-IC-233.14015.106/jbr/lib/chrome-sandbox

https://stackoverflow.com/questions/67240649/deeplearning4j-doc2vec-input-structure
https://blog.csdn.net/luoyexuge/article/details/73360115
https://github.com/deeplearning4j/deeplearning4j-docs/blob/master/cn/doc2vec.html
/home/gitpod/dl4j-examples-data/dl4j-examples/nlp/paravec
dl4j-examples/src/main/java/org/deeplearning4j/examples/advanced/modelling/embeddingsfromcorpus/paragraphvectors/ParagraphVectorsClassifierExample.java

A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments
https://pubmed.ncbi.nlm.nih.gov/34600934/
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9289621/

https://blog.csdn.net/qq_42402854/article/details/130932936
https://blog.csdn.net/hchyboy/article/details/132927047
parallel 'bgzip {}' ::: *.fastq

https://talk.gitee.com/report/china-open-source-2023-annual-report.pdf
https://www.semanticscholar.org/search?q=Healthcare+Knowledge+Graph+Construction&sort=relevance

本地私有化部署企业专有llm大语言模型

论文

• https://arxiv.org/
• https://www.medrxiv.org/

影响因子

• https://www.medsci.cn/sci/index.do

计划

• 搭建spark集群
• 搭建Kubernetes集群
• gitee接口支持
  https://ocw.nycu.edu.tw/

https://linuxera.org/cpu-memory-management-kubernetes-cgroupsv2/

学习

• Kubernetes (K8S) 3 小时快速上手 + 实践

网站计划

• 创建商品特有的文章和分类实体
• zotero实现增量同步

---

• 动态生成全站最后更新文章列表，方便回顾最近的工作(已完成)
• 基于给定标签生成力向图，最后更新时间约近，文章数量越多节点越大(已完成)

小说

• https://www.zzxx.org/xs/3983/2346575.html
• The Little Prince

有趣的发现

• github.com/explore发现最新的生信工具
• 从讨论中发现github star list的接口https://api.github.com/users/wangyang1749/starred
• use star repos topics tag auto create a awesome-list and update everyday.https://github.com/maguowei/starred#use-awesome-stars-as-template是做什么用的？
• /star-history.com/blog/coding-ai

chatgpt

• https://chatbot.theb.ai/#/chat/1683720037849
• https://poe.com/ChatGPT

文献

• https://www.semanticscholar.org/
• https://www.researcher-app.com/

AI

• AI生成视频

图标库

• https://www.freepik.com/icons/powerpoint/2
• https://pixabay.com/images/search/background/

在线IDE

• 前端(vew、React)编辑器
• vscode
• google colab(jupyter)
• ide.aliyun.com
• chatdoc
• chatpdf

管理工具

• task.bioinfo.online
• xmind.works
• convert html to markdown
• markdown样式

绘图工具

• https://app.diagrams.net/
• excalidraw
• 图标

gitpage

• bioproj.github.io

pdf翻译

• onlinedoctranslator

生物信息要完成的计算任务

• Quickly align large sets of short DNA sequences to large genomes, e.g. Bowtie.
• Splice junction mapper for RNA-seq reads, e.g tophat.
• Assembly aligned RNA-Seq reads into transcripts, estimates their abundances, e.g. Cufflinks.
• Find regions of similarity between sequences, e.g. blast.

问题

基因组上 fasta文件如何存储haplotype信息，alignment programs如何处理这些信息？
alignment programs如何处理N填充haplotype/patch区域?

.toplevel - Includes haplotype information (not sure how aligners deal with this)，这些文件包含Ensembl模式中标记为顶层的所有序列区域。这包括染色体、未组装成染色体的区域和N填充haplotype/patch区域。