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扩增子16S上游分析流程

最后发布时间 : 2022-11-04 08:35:41 浏览量 :

测序数据

SampleIDGroupDateSiteCRACRRBarcodeSequenceLinkerPrimerSequenceReversePrimerBatchSpeciesSequencingPlatformlatitude_longitudeDescriptionfq1fq2
KO1KO2017/6/30ChaoyangCRA002352CRR117575ACGCTCGACAAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250039.59 N 116.22 EKnock-out replicate 1KO1_1.fq.gzKO1_2.fq.gz
KO2KO2017/6/30ChaoyangCRA002352CRR117576ATCAGACACGAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250039.59 N 116.22 EKnock-out replicate 2KO2_1.fq.gzKO2_2.fq.gz
KO3KO2017/7/2ChangpingCRA002352CRR117577ATATCGCGAGAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.42 EKnock-out replicate 3KO3_1.fq.gzKO3_2.fq.gz
KO4KO2017/7/2ChangpingCRA002352CRR117578CACGAGACAGAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.42 EKnock-out replicate 4KO4_1.fq.gzKO4_2.fq.gz
KO5KO2017/7/4HaidianCRA002352CRR117579CTCGCGTGTCAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.21 EKnock-out replicate 5KO5_1.fq.gzKO5_2.fq.gz
KO6KO2017/7/4HaidianCRA002352CRR117580TAGTATCAGCAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.21 EKnock-out replicate 6KO6_1.fq.gzKO6_2.fq.gz
OE1OE2017/6/30ChaoyangCRA002352CRR117581TCTCTATGCGAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250039.59 N 116.22 EOver-expresion replicate 1OE1_1.fq.gzOE1_2.fq.gz
OE2OE2017/6/30ChaoyangCRA002352CRR117582TACTGAGCTAAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250039.59 N 116.22 EOver-expresion replicate 2OE2_1.fq.gzOE2_2.fq.gz
OE3OE2017/7/2ChangpingCRA002352CRR117583CATAGTAGTGAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.42 EOver-expresion replicate 3OE3_1.fq.gzOE3_2.fq.gz
OE4OE2017/7/2ChangpingCRA002352CRR117584CGAGAGATACAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.42 EOver-expresion replicate 4OE4_1.fq.gzOE4_2.fq.gz
OE5OE2017/7/4HaidianCRA002352CRR117585ATACGACGTAAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.21 EOver-expresion replicate 5OE5_1.fq.gzOE5_2.fq.gz
OE6OE2017/7/4HaidianCRA002352CRR117586TCACGTACTAAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.21 EOver-expresion replicate 6OE6_1.fq.gzOE6_2.fq.gz
WT1WT2017/6/30ChaoyangCRA002352CRR117587CGTCTAGTACAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250039.59 N 116.22 EWild-type replicate 1WT1_1.fq.gzWT1_2.fq.gz
WT2WT2017/6/30ChaoyangCRA002352CRR117588TCTACGTAGCAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250039.59 N 116.22 EWild-type replicate 2WT2_1.fq.gzWT2_2.fq.gz
WT3WT2017/7/2ChangpingCRA002352CRR117589CACGCGAGTCAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.42 EWild-type replicate 3WT3_1.fq.gzWT3_2.fq.gz
WT4WT2017/7/2ChangpingCRA002352CRR117590ACGACTACAGAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.42 EWild-type replicate 4WT4_1.fq.gzWT4_2.fq.gz
WT5WT2017/7/4HaidianCRA002352CRR117591CGTAGACTAGAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.21 EWild-type replicate 5WT5_1.fq.gzWT5_2.fq.gz
WT6WT2017/7/4HaidianCRA002352CRR117592TACGAGTATGAACMGGATTAGATACCCKGACGTCATCCCCACCTTCC1Arabidopsis thalianaNovageneHiSeq250040.10 N 116.21 EWild-type replicate 6WT6_1.fq.gzWT6_2.fq.gz

工具使用的数据库

流程概述

测试数据集 数据预处理