生物信息学笔记

生物信息学笔记 一共收录文章80篇, 一共有8页, 每页显示10
some genes have the same rank Foldchange

Warning message in preparePathwaysAndStats(pathways, stats, minSize, maxSize, gseaParam, :“There are....

2023-10-18 19:39:51 PUBLISHED

AnnotationDbi

AnnotationDbihbctraining AnnotationDbi....

2022-09-05 13:39:55 PUBLISHED

Featurecount to RPKM计算

https://www.jianshu.com/p/6a364dc7bd03# https://www.bioinfo-scrounger.com/archives/342/library(Genom....

2022-08-22 16:20:25 PUBLISHED

StringTie and Cufflinks transcript assembly and quantification for RNA-Seq

首先这两款软件都是用于基于参考基因组的转录组组装,当然也可用于转录本的定量。前者于2016年的 protocol上发表的转录组流程HISAT, StringTie and Ballgown后被广泛使用....

2022-08-21 20:57:10 PUBLISHED

SAM Format

Mapped within the insert size and in correct orientation:TagNM:i:0: number of readsMD:Z:60A: 60 matc....

2023-05-09 22:56:13 PUBLISHED

fastqc、multiqc、cutadapt、Trimmomatic、Trim Galore、fastp

Shifu Chen, Computational Systems Biology, 2018, 67–95Trim GaloreTrim Galore is a a Perl wrapper aro....

2022-08-14 00:06:07 PUBLISHED

tophat

ophat2 : Download, build reference genome and align the reads to the reference genomehttps://web.aze....

2022-08-12 20:57:48 PUBLISHED

哈佛资源

Introduction to RNA-Seq using high-performance computinghttps://bihealth.github.io/bih-cluster/slurm....

2022-08-05 07:13:35 PUBLISHED

What is a Quality Score in Sequencing?

Q Score DefinitionThe sequencing quality score of a given base, Q, is defined by the following equat....

2022-07-28 14:56:13 PUBLISHED

Branch expression analysis modeling

Monocle 2 的主要工作是使细胞按照生物过程的进展进行排序。一旦对细胞进行排序后,就可以分析这些细胞,找到随着细胞进展而变化的基因。Monocle 2为每一个细胞分配一个pseudotime的值....

2022-07-22 11:35:12 PUBLISHED