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some genes have the same rank Foldchange
Warning message in preparePathwaysAndStats(pathways, stats, minSize, maxSize, gseaParam, :“There are....
发布于: 2023-10-18 19:39:51 -
AnnotationDbi
AnnotationDbihbctraining AnnotationDbi....
发布于: 2022-09-05 13:39:55 -
Featurecount to RPKM计算
https://www.jianshu.com/p/6a364dc7bd03# https://www.bioinfo-scrounger.com/archives/342/library(Genom....
发布于: 2022-08-22 16:20:25 -
StringTie and Cufflinks transcript assembly and quantification for RNA-Seq
首先这两款软件都是用于基于参考基因组的转录组组装，当然也可用于转录本的定量。前者于2016年的 protocol上发表的转录组流程HISAT, StringTie and Ballgown后被广泛使用....
发布于: 2022-08-21 20:57:10 -
SAM Format
Mapped within the insert size and in correct orientation:TagNM:i:0: number of readsMD:Z:60A: 60 matc....
发布于: 2023-05-09 22:56:13 -
fastqc、multiqc、cutadapt、Trimmomatic、Trim Galore、fastp
Shifu Chen, Computational Systems Biology, 2018, 67–95Trim GaloreTrim Galore is a a Perl wrapper aro....
发布于: 2022-08-14 00:06:07 -
tophat
ophat2 : Download, build reference genome and align the reads to the reference genomehttps://web.aze....
发布于: 2022-08-12 20:57:48 -
哈佛资源
Introduction to RNA-Seq using high-performance computinghttps://bihealth.github.io/bih-cluster/slurm....
发布于: 2022-08-05 07:13:35 -
What is a Quality Score in Sequencing?
Q Score DefinitionThe sequencing quality score of a given base, Q, is defined by the following equat....
发布于: 2022-07-28 14:56:13 -
Branch expression analysis modeling
Monocle 2 的主要工作是使细胞按照生物过程的进展进行排序。一旦对细胞进行排序后，就可以分析这些细胞，找到随着细胞进展而变化的基因。Monocle 2为每一个细胞分配一个pseudotime的值....
发布于: 2022-07-22 11:35:12
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