展开

Running Snakemake in conda env

最后发布时间 : 2023-01-06 15:05:51 浏览量 :
  • --conda-base-path
    Path of conda base installation (home of conda, mamba, activate) (internal use only).
  • --use-conda
  • --conda-not-block-search-path-envvars
  • --list-conda-envs
  • --conda-prefix DIR
  • --conda-create-envs-only
  • --conda-frontend {conda,mamba}
  • --conda-cleanup-envs
  • --conda-cleanup-pkgs [{tarballs,cache}]
.snakemake/conda/4cdf219386f24a8e6c0edad28e1d13fb/conda-meta/history:2:# cmd: 
/data3/cluster/anaconda3/bin/mamba create 
--quiet --file /data3/cluster/workspace/STAR/.snakemake/conda/4cdf219386f24a8e6c0edad28e1d13fb.yaml 
--prefix /data3/cluster/workspace/STAR/.snakemake/conda/4cdf219386f24a8e6c0edad28e1d13fb

https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#using-already-existing-named-conda-environments