生信软件管理

https://hub.docker.com/repositories/wybioinfo

StaPH-B/docker-builds、gafl/singularity

deeparg short_reads_pipeline \
    --forward_pe_file ./F.fq.gz \
    --reverse_pe_file ./R.fq.gz \
    --output_file  ./test2/test  \
    -d /ssd1/zyd/bin/deeparg/database \
    --bowtie_16s_identity 100


apptainer  exec --bind /data:/data  --bind /ssd1:/ssd1  /ssd1/zyd/bin/deeparg/deeparg_latest.sif \
    deeparg short_reads_pipeline \
    --forward_pe_file /data/metagenomics/pml_nextflow/deeparg/F.fq.gz \
    --reverse_pe_file /data/metagenomics/pml_nextflow/deeparg/R.fq.gz \
    --output_file  /data/metagenomics/pml_nextflow/deeparg/test2/test  \
    -d /ssd1/zyd/bin/deeparg/database

docker run --rm -v  /data:/data   -v  /ssd1:/ssd1   gaarangoa/deeparg:latest   \
     deeparg short_reads_pipeline     \
     --forward_pe_file /data/metagenomics/pml_nextflow/deeparg/F.fq.gz     \
     --reverse_pe_file /data/metagenomics/pml_nextflow/deeparg/R.fq.gz     \
     --output_file  /data/metagenomics/pml_nextflow/deeparg/test2/test      \
     -d /ssd1/zyd/bin/deeparg/database \
      --bowtie_16s_identity 100