R 流程设计

• https://github.com/bioproj/transcriptomics
• https://github.com/gezp/docker-ubuntu-desktop

FROM registry.cn-hangzhou.aliyuncs.com/wybioinfo/tidyverse:4.4
# RUN apt-get update -y
# RUN apt-get install libbz2-dev -y

# docker build -t registry.cn-hangzhou.aliyuncs.com/wybioinfo/tidyverse:4.4 .

docker run --rm -it \
	-e USERID=$(id -u) -e GROUPID=$(id -g) \
	-e DISABLE_AUTH=true \
	 -p 8787:8787  \
	-w $PWD \
	-v $PWD:/home/rstudio  \
	-v $PWD:$PWD \
	registry.cn-hangzhou.aliyuncs.com/wybioinfo/tidyverse:4.4  bash

• registry.cn-hangzhou.aliyuncs.com/wybioinfo/scenic:1.3.1

FROM 192.168.3.60:5001/debian-xfce-vnc:latest
COPY . /opt
USER root
RUN dpkg -i /opt/baidunetdisk_4.17.7_amd64.deb

# docker build -t 192.168.3.60:5001/debian-xfce-vnc:latest   .

jupyter

registry.cn-hangzhou.aliyuncs.com/wybioinfo/r-notebook:x86_64-ubuntu-22.04

百度网盘数据下载

docker run -p 6901:6901 --rm -it -v $PWD:$PWD -w $PWD \
	registry.cn-hangzhou.aliyuncs.com/wybioinfo/debian-xfce-vnc:latest

密码为:vncpassword,也可使用参数?password=vncpassword

gitpod

• https://gitpod.io/new/?autostart=true#https://github.com/bioproj/transcriptomics