Gene ID的类型

CXCR4

miRNA（hsa-miR-655）

• https://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=MI0003677
• https://rnacentral.org/search?q=hsa-miR-655
  
  图片alt

rnacentral.org

>URS00005E1A16_9606 Homo sapiens (human) hsa-miR-655-3p
ATAATACATGGTTAACCTCTTT
>URS000075AA28_9606 Homo sapiens (human) hsa-miR-655-5p
AGAGGTTATCCGTGTTATGTTC
>URS000075B3AB_9606 Homo sapiens (human) microRNA hsa-mir-655 precursor
AACTATGCAAGGATATTTGAGGAGAGGTTATCCGTGTTATGTTCGCTTCATTCATCATGA
ATAATACATGGTTAACCTCTTTTTGAATATCAGACTC

www.mirbase.org

>hsa-mir-655 MI0003677
AACUAUGCAAGGAUAUUUGAGGAGAGGUUAUCCGUGUUAUGUUCGCUUCAUUCAUCAUGAAUAAUACAUGGUUAACCUCUUUUUGAAUAUCAGACUC
>hsa-miR-655-5p MIMAT0026626
AGAGGUUAUCCGUGUUAUGUUC
>hsa-miR-655-3p MIMAT0003331
AUAAUACAUGGUUAACCUCUUU

lncRNA (SERPINB9P1)

mRNA

• GenBank Accession: NM_001193338
• NCBI Gene ID
• Gene Symbol

library(org.Hs.eg.db)
keytypes(org.Hs.eg.db) #查看基因编号系统名称
library(clusterProfiler)
EG2Ensembl=toTable(org.Hs.egREFSEQ)
eg = bitr(x, fromType="SYMBOL", toType="ENTREZID", OrgDb="org.Hs.eg.db")

http://bioconductor.org/packages/release/BiocViews.html#___OrgDb