关于lncRNA

同一个lncRNA名称 ensembl Id 不同

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同一个ensembl Id lncRNA名称不同

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lncRNA [SERPINB9P1]

• Official Symbol：SERPINB9P1
• NCBI Gene ID:221756
• Gene: SERPINB9P1 ENSG00000230438

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lncRNA的gene_type

Biotypes

• Long non-coding RNA (lncRNA): A non-coding gene/transcript >200bp in length
  • 3' overlapping ncRNA
  • Antisense
  • Macro lncRNA
  • Non coding
  • Retained intron
  • Sense intronic
  • Sense overlapping
  • lincRNA (long intergenic ncRNA)

lncRNA_types <- "3prime_overlapping_ncrna, antisense, bidirectional_promoter_lncRNA, lincRNA, macro_lncRNA, non_coding, processed_transcript, sense_intronic, sense_overlapping"
lncRNA_types <- unlist(str_split(lncRNA_types, pattern = ", "))
lncRNA_types
lncRNA_types %in% unique(gtf_v22$gene_type)

参考

• https://hg19.lncipedia.org/db/transcript/lnc-SERPINB9-1:5
• https://www.ncbi.nlm.nih.gov/gene/221756