wget -O transcriptomics.zip https://bioinfo.online/pay/transcriptomics.55fe0636-c9f9-4300-852e-14b3b9c86f3b.zip
&& unzip transcriptomics.zip
&& rm transcriptomics.zip

ch_input = Channel2.fromApi(params.workflowId)

web{
    url="http://192.168.10.177:30000/service-platform/sample-analysis/get-by-workflow-id"
    authorize="ADMIN-TEMPLATE"
}

LimeSurvey
CatInHat
<>
https://www.jianshu.com/p/cd0c2b137bc0
code server: https://blog.csdn.net/bf96163/article/details/129012833
https://openjfx.cn/
lims: https://gitee.com/guotong520/lims
https://www.semanticscholar.org/paper/A-Novel-E3-Probiotics-Formula-Restored-Gut-and-Gut-Choy-Chan/93c17a7964522c00f6a0d857b6777d276a68e19f
pdf https://github.com/Stirling-Tools/Stirling-PDF
https://help.aliyun.com/zh/edas/developer-reference/implement-load-balancing?spm=a2c4g.11186623.0.0.10ae67a5nPURFq

http://192.168.0.178:8787/
https://jeecg.com/doc/demo
https://cmdcolin.github.io/awesome-genome-visualization/?language=&tag=&platform=&latest=true
https://medium.com/testable-io/packaging-java-applications-beware-of-one-jar-a2f5ee116f48
monica
https://gohugo.io/
https://www.youtube.com/watch?v=ftlZ0oeXYRE&t=13s

https://ttsmaker.com/zh-cn
https://ai.invideo.io/
https://ttsmaker.cn/?s=com
https://pytorch.org/audio/main/tutorials/forced_alignment_tutorial.html

https://zhuanlan.zhihu.com/p/633870298
https://dashscope.aliyun.com/?spm=5176.13379658.J_9504402170.3.6b091c025R9kHJ
https://pubmed.ncbi.nlm.nih.gov/30661756/

ide.browser.jcef.sandbox.enable = false

https://blog.csdn.net/qq_26898033/article/details/133696108
/ssd2/software/idea-IC-233.14015.106/jbr/lib/chrome-sandbox

https://stackoverflow.com/questions/67240649/deeplearning4j-doc2vec-input-structure
https://blog.csdn.net/luoyexuge/article/details/73360115
https://github.com/deeplearning4j/deeplearning4j-docs/blob/master/cn/doc2vec.html
/home/gitpod/dl4j-examples-data/dl4j-examples/nlp/paravec
dl4j-examples/src/main/java/org/deeplearning4j/examples/advanced/modelling/embeddingsfromcorpus/paragraphvectors/ParagraphVectorsClassifierExample.java

A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments
https://pubmed.ncbi.nlm.nih.gov/34600934/
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9289621/

https://blog.csdn.net/qq_42402854/article/details/130932936
https://blog.csdn.net/hchyboy/article/details/132927047
parallel 'bgzip {}' ::: *.fastq

https://talk.gitee.com/report/china-open-source-2023-annual-report.pdf
https://www.semanticscholar.org/search?q=Healthcare+Knowledge+Graph+Construction&sort=relevance

本地私有化部署企业专有llm大语言模型

提示词

我给你一些标签  病原检测 毒力因子检测 耐药基因检测 微生物-代谢/免疫 微生物-药物 请按照这个规律给这篇文章一个标签

论文

影响因子

https://www.medsci.cn/sci/index.do

计划

搭建spark集群
搭建Kubernetes集群
gitee接口支持
https://ocw.nycu.edu.tw/

https://linuxera.org/cpu-memory-management-kubernetes-cgroupsv2/

学习

Kubernetes (K8S) 3 小时快速上手 + 实践

网站计划

创建商品特有的文章和分类实体
zotero实现增量同步

动态生成全站最后更新文章列表，方便回顾最近的工作(已完成)
基于给定标签生成力向图，最后更新时间约近，文章数量越多节点越大(已完成)

小说

有趣的发现

github.com/explore发现最新的生信工具
从讨论中发现github star list的接口https://api.github.com/users/wangyang1749/starred
use star repos topics tag auto create a awesome-list and update everyday.https://github.com/maguowei/starred#use-awesome-stars-as-template是做什么用的？
/star-history.com/blog/coding-ai

chatgpt

文献

开源

https://github.com/521xueweihan/HelloGitHub

AI

图标库

latex

simpletex

在线IDE

管理工具

绘图工具

gitpage

bioproj.github.io

pdf翻译

onlinedoctranslator

生物信息要完成的计算任务

Quickly align large sets of short DNA sequences to large genomes, e.g. Bowtie.
Splice junction mapper for RNA-seq reads, e.g tophat.
Assembly aligned RNA-Seq reads into transcripts, estimates their abundances, e.g. Cufflinks.
Find regions of similarity between sequences, e.g. blast.

问题

基因组上 fasta文件如何存储haplotype信息，alignment programs如何处理这些信息？
alignment programs如何处理N填充haplotype/patch区域?

.toplevel - Includes haplotype information (not sure how aligners deal with this)，这些文件包含Ensembl模式中标记为顶层的所有序列区域。这包括染色体、未组装成染色体的区域和N填充haplotype/patch区域。

![alt text](https://star-history.com/assets/blog/ai-data-visualization/pandas-ai-star.webp "Title Text"){width=400px}

addition 1
~~deletion 4~~
Text with backticks inside

![](moon.jpg)

alt text

Press Enter to go to the next page.

Click to expand

These details remain hidden until expanded.

PASTE LOGS HERE

https://codesandbox.io/

https://subtitlecomposer.kde.org/
https://chrome.google.com/webstore/detail/youtube-dual-subtitles/hkbdddpiemdeibjoknnofflfgbgnebcm?hl=zh-CN

https://zhuanlan.zhihu.com/p/363964528?ivk_sa=1024320u
https://ask.latexstudio.net/
https://beikolab.cs.dal.ca/software/STAMP
http://oss.bioinfo.online/9090/
https://www.jianshu.com/p/d4e0aaf5a9a6
https://idoc.pub/
https://kupdf.net/
https://oiipdf.com/
http://speech.ee.ntu.edu.tw/~tlkagk/courses.html
http://ocw.aca.ntu.edu.tw/ntu-ocw/ocw/coupage/1
https://www.w3cschool.cn/html5/bxieufld.html
https://www.mathjax.org/
https://www.bioinfo.info/?/question/3537
通过 CSS3DRenderer 实现全景浏览
 【R语言】tidyverse之六：修改列
 tidyverse之四：选择列
 https://zhuanlan.zhihu.com/p/36346992
GDCRNATools: integrative analysis of protein coding genes, long non-coding genes, and microRNAs in GDC
https://www.jianshu.com/p/2689e9a1d10c
https://www.jianshu.com/p/9864be30ebce
https://cran.r-project.org/doc/FAQ/R-FAQ.html#How-can-I-get-eval_0028_0029-and-D_0028_0029-to-work_003f
https://www.jianshu.com/p/d5a64b9d6179
https://docs.docker.com/engine/install/ubuntu/
r-pkgs书籍
 https://roxygen2.r-lib.org/articles/roxygen2.html
https://plotly.com/python/getting-started/
对Illumina高通量RNA测序数据分析的归一化方法的全面评估
 综合评估RNA-seq数据的差异基因表达分析方法
 R语言统计与绘图：ggsurvplot()函数绘制Kaplan-Meier生存曲线
 富集分析不光有条带图和点图
 rdrr.io
https://tding.top/archives/c363755b.html

RPubs.com：你可以看到各式各样的基于R Markdown编译出来的网页报告
OpenCPU：它是一个基于R的网络开发平台，例如这里有一个knitr应用,点点鼠标就可以动态生成一篇报告了
CRUNCH：又一个基于R的计算与服务平台，也可以调用knitr生成报告（支持比OpenCPU更好）
RCloud：基于Rserve包和knitr的网络应用，提供了一个可以合作编写报告的平台
Vistat：基于GitHub/Jekyll的在线小刊物，主要演示统计图形以及相应的代码，背后的引擎仍然是knitr，用简单的+ Markdown就能生成一个漂亮有用的网站

https://www.rdocumentation.org/packages/knitr/versions/1.30/topics/render_html
https://bookdown.org/yihui/rmarkdown-cookbook/output-hooks.html
https://blog.csdn.net/weixin_33037313/article/details/112320233
https://blog.csdn.net/weixin_39556044/article/details/104048771
http://datasciencefree.com/advancedR.pdf
https://mirrors.tuna.tsinghua.edu.cn/help/ubuntu/
https://blog.csdn.net/luodong1501/article/details/106177355/

R in Action
R Graphics Cookbook
R for Data Science

https://liulab-dfci.github.io/
https://www.medsci.cn/sci/impact-index?id=a4ca11470
癌症药物敏感性基因组学
- 找出耐药基因
https://mirrors.tuna.tsinghua.edu.cn/help/bioconductor/
生物图片
https://gemma.msl.ubc.ca/arrays/showArrayDesign.html?id=380
ubuntu显卡安装
https://zhuanlan.zhihu.com/p/59618999
ubuntu截图
https://blog.csdn.net/daerzei/article/details/84875573
R面向对象
https://dataxujing.github.io/R_oop/S4.html#s4
pdf阅读
https://getpolarized.io/download/
https://unicode-table.com/cn/sets/numerals/
Rsubread RNAseq处理
Ⅰ、Ⅱ、Ⅲ、Ⅳ、Ⅴ、Ⅵ、Ⅶ、Ⅷ、Ⅸ、Ⅹ、Ⅺ、Ⅻ
α β γ δ ε ζ Alpha Beta Gamma Delta Epsilon Zeta
metap
边写边搜
Broad Institute
RNA-seq twitter
Columbia Public Health Methods
The Proceedings of the National Academy of Sciences (PNAS)
ggcor在微生物分析中实战使用
SeqIO
https://mojaveazure.github.io/seurat-disk/articles/convert-anndata.html
https://mathstat.slu.edu/~speegle/Spring2020/4870/_book/index.html

https://md.openwrite.cn/
https://www.latexlive.com/
846142081@qq.com
https://hbctraining.github.io/Intro-to-rnaseq-hpc-O2/lessons/03_alignment.html
https://serverok.in/install-visual-studio-code-server

https://github.com/SouthGreenPlatform/singularityRecipeFiles/blob/master/tophat-2.1.1.def
https://forgemia.inra.fr/gafl/singularity/htseq/-/blob/master/Singularity.htseq_v0.12.4

https://www.jianshu.com/p/949a4c7f9b26
https://gitlab.rlp.net/imbforge/sysops
https://genomics.sschmeier.com/ngs-mapping/index.html

http://adv-r.had.co.nz/S4.html

https://acutecaretesting.org/en/articles/roc-curves-what-are-they-and-how-are-they-used
https://blog.csdn.net/u013810234/article/details/121876649

https://smartkeyerror.com/Linux-Use-EasyConnect