• 提示词
• 论文
• 影响因子
• 计划
• 学习
• 网站计划
• 小说
• 有趣的发现
• chatgpt
• 文献
• 开源
• AI
• 图标库
• latex
• 在线IDE
• 管理工具
• 绘图工具
• gitpage
• pdf翻译
• 生物信息要完成的计算任务
• 问题

1. cobalt.tools — 下载任何社交媒体视频

2. photopea.com — 免费 Photoshop

3. temp-mail.org — 一键临时电子邮件

4. tinywow.com — 超过 100 个免费工具在一个网站上

5. archive.org — 访问任何旧网页

6. libgen.li — 数百万免费教科书

7. sci-hub.al — 免费研究文章

8. alternativeto.net — 找到应用的免费替代品

9. justwatch.com — 定位任何内容的流媒体位置

10. gutenberg.org — 70,000 本免费经典书籍

11. pdfdrive.com — 免费 PDF 下载

12. openculture.com — 精英大学的免费课程

13. wolframalpha.com — 瞬间解决任何数学问题

14. remove.bg — 一键去除背景

15. cleanup.pictures — 从照片中删除物体

16. unscreen.com — 免费去除视频背景

17. squoosh.app — 免费压缩任何图像

18. excalidraw.com — 免费手绘图形

19. carbon.now.sh — 将代码转化为艺术作品

20. ray.so — 令人印象深刻的代码截图

21. flightradar24.com — 实时追踪任何航班

22. camelcamelcamel.com — 追踪亚马逊价格历史

23. haveibeenpwned.com — 检查你是否被黑客攻击

24. virustotal.com — 扫描任何文件的恶意软件

25. privnote.com — 发送自毁消息

26. file.io — 分享自动删除的文件

27. archive.ph — 永久存档任何网页

28. accountkiller.com — 从任何网站删除你的存在

29. radio.garden — 收听全球任何广播电台

30. tunefind.com — 识别任何节目中的歌曲

31. musicforprogramming.net — 专注用的音乐

32. mynoise.net — 定制声音景观来提升专注力

33. annasarchive.org — 搜索所有已出版的书籍

34. elicit.com — 研究文章的 AI 助手

35. consensus.app — 搜索科学共识

36. connectedpapers.com — 视觉化映射研究

37. semanticscholar.org — 免费学术搜索

38. scispace.com — 理解任何研究文章

39. summarize.tech — 总结任何 YouTube 视频

40. phind.com — 开发者 AI 搜索

41. regex101.com — 瞬间测试任何正则表达式

42. codebeautify.org — 清晰格式化任何代码

43. explainshell.com — 理解终端命令

44. tldraw.com — 浏览器中的无限画板

45. downdetector.com — 检查网站是否宕机

46. tineye.com — 图片反向搜索

47. fast.com — 测试你的网速

48. smallpdf.com — 免费编辑 PDF

49. ilovepdf.com — 合并和拆分 PDF

50. 10minutemail.com — 秒级临时邮箱

https://17aitech.com/?p=13611

https://github.com/excalidraw/excalidraw/discussions/3756
https://github.com/excalidraw/excalidraw/issues/7834#issue-2218786852
https://search.google.com/search-console
https://www.bing.com/webmasters/home
https://fontawesome.com/
https://idx.google.com/pipeline-proj-ui-5451306
https://app.apifox.com/project/4037616
https://link.springer.com/article/10.1007/s13721-024-00458-1
https://microbiomejournal.biomedcentral.com/articles
https://waywordradio.org/potato-wagon/
https://www.oxfordlearnersdictionaries.com/wordlists/oxford3000-5000
https://hellogithub.com/
https://gitstars.cfour.top/
https://star-history.com/blog/knowledge-management
http://bioinformatics.com.cn/plot_basic_kaplan_meier_survival_curve_plot_040
https://www.lianxh.cn/details/1513.html
https://www.napkin.ai/
https://tidyplots.org/

https://draw.roadmap.sh/674adb175039431075998bb6

https://www.aminer.cn/

This stretched link will only be spread over the p-tag, because a transform is applied to it.

AI助力科研

• 析易

静态网页

• Astro
• tailwindcss

知识库

• 思维导图
• excalidraw-animate
• paint-board

流程

• xyflow

https://ishadeed.com/speaking/

https://www.xieasy.com/login?Rurl=%2Ftools%2Findex

https://form.antdv.com/

https://getbootstrap.com/docs/4.5/getting-started/introduction/

https://moodist.mvze.net/
https://julebu.co/home
https://gitstars.cfour.top/
https://star-history.com/blog/homelab
SCENIC^[1]

https://www.table-generator.de/generator
https://img.shields.io
https://revezone.com/
https://chatgpt.com/
https://www.chartjs.org/docs/latest/

https://jspaint.app/#local:cc995483c64bc

wget -O transcriptomics.zip https://bioinfo.online/pay/transcriptomics.55fe0636-c9f9-4300-852e-14b3b9c86f3b.zip
&& unzip transcriptomics.zip
&& rm transcriptomics.zip

ch_input = Channel2.fromApi(params.workflowId)

web{
    url="http://192.168.10.177:30000/service-platform/sample-analysis/get-by-workflow-id"
    authorize="ADMIN-TEMPLATE"
}

LimeSurvey
CatInHat
<>
https://www.jianshu.com/p/cd0c2b137bc0
code server: https://blog.csdn.net/bf96163/article/details/129012833
https://openjfx.cn/
lims: https://gitee.com/guotong520/lims
https://www.semanticscholar.org/paper/A-Novel-E3-Probiotics-Formula-Restored-Gut-and-Gut-Choy-Chan/93c17a7964522c00f6a0d857b6777d276a68e19f
pdf https://github.com/Stirling-Tools/Stirling-PDF
https://help.aliyun.com/zh/edas/developer-reference/implement-load-balancing?spm=a2c4g.11186623.0.0.10ae67a5nPURFq

http://192.168.0.178:8787/
https://jeecg.com/doc/demo
https://cmdcolin.github.io/awesome-genome-visualization/?language=&tag=&platform=&latest=true
https://medium.com/testable-io/packaging-java-applications-beware-of-one-jar-a2f5ee116f48
monica
https://gohugo.io/
https://www.youtube.com/watch?v=ftlZ0oeXYRE&t=13s

https://ttsmaker.com/zh-cn
https://ai.invideo.io/
https://ttsmaker.cn/?s=com
https://pytorch.org/audio/main/tutorials/forced_alignment_tutorial.html

https://zhuanlan.zhihu.com/p/633870298
https://dashscope.aliyun.com/?spm=5176.13379658.J_9504402170.3.6b091c025R9kHJ
https://pubmed.ncbi.nlm.nih.gov/30661756/

ide.browser.jcef.sandbox.enable = false

https://blog.csdn.net/qq_26898033/article/details/133696108
/ssd2/software/idea-IC-233.14015.106/jbr/lib/chrome-sandbox

https://stackoverflow.com/questions/67240649/deeplearning4j-doc2vec-input-structure
https://blog.csdn.net/luoyexuge/article/details/73360115
https://github.com/deeplearning4j/deeplearning4j-docs/blob/master/cn/doc2vec.html
/home/gitpod/dl4j-examples-data/dl4j-examples/nlp/paravec
dl4j-examples/src/main/java/org/deeplearning4j/examples/advanced/modelling/embeddingsfromcorpus/paragraphvectors/ParagraphVectorsClassifierExample.java

A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments
https://pubmed.ncbi.nlm.nih.gov/34600934/
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9289621/

https://blog.csdn.net/qq_42402854/article/details/130932936
https://blog.csdn.net/hchyboy/article/details/132927047
parallel 'bgzip {}' ::: *.fastq

https://talk.gitee.com/report/china-open-source-2023-annual-report.pdf
https://www.semanticscholar.org/search?q=Healthcare+Knowledge+Graph+Construction&sort=relevance

本地私有化部署企业专有llm大语言模型

提示词

我给你一些标签  病原检测 毒力因子检测 耐药基因检测 微生物-代谢/免疫 微生物-药物 请按照这个规律给这篇文章一个标签

论文

• https://arxiv.org/
• https://www.medrxiv.org/

影响因子

• https://www.medsci.cn/sci/index.do

计划

• 搭建spark集群
• 搭建Kubernetes集群
• gitee接口支持
  https://ocw.nycu.edu.tw/

https://linuxera.org/cpu-memory-management-kubernetes-cgroupsv2/

学习

• Kubernetes (K8S) 3 小时快速上手 + 实践

网站计划

• 创建商品特有的文章和分类实体
• zotero实现增量同步

• 动态生成全站最后更新文章列表，方便回顾最近的工作(已完成)
• 基于给定标签生成力向图，最后更新时间约近，文章数量越多节点越大(已完成)

小说

• https://www.zzxx.org/xs/3983/2346575.html
• The Little Prince

有趣的发现

• github.com/explore发现最新的生信工具
• 从讨论中发现github star list的接口https://api.github.com/users/wangyang1749/starred
• use star repos topics tag auto create a awesome-list and update everyday.https://github.com/maguowei/starred#use-awesome-stars-as-template是做什么用的？
• /star-history.com/blog/coding-ai

chatgpt

• https://chatbot.theb.ai/#/chat/1683720037849
• https://poe.com/ChatGPT

文献

• https://www.semanticscholar.org/
• https://www.researcher-app.com/

开源

• https://github.com/521xueweihan/HelloGitHub

AI

• AI生成视频
• poloclub.github.io

图标库

• https://www.freepik.com/icons/powerpoint/2
• https://pixabay.com/images/search/background/
• https://icones.js.org/collection/mdi-light

latex

• simpletex

在线IDE

• 前端(vew、React)编辑器
• vscode
• google colab(jupyter)
• ide.aliyun.com
• chatdoc
• chatpdf

管理工具

• task.bioinfo.online
• xmind.works
• convert html to markdown
• markdown样式

绘图工具

• https://app.diagrams.net/
• excalidraw
• 图标

gitpage

• bioproj.github.io

pdf翻译

• onlinedoctranslator

生物信息要完成的计算任务

• Quickly align large sets of short DNA sequences to large genomes, e.g. Bowtie.
• Splice junction mapper for RNA-seq reads, e.g tophat.
• Assembly aligned RNA-Seq reads into transcripts, estimates their abundances, e.g. Cufflinks.
• Find regions of similarity between sequences, e.g. blast.

问题

基因组上 fasta文件如何存储haplotype信息，alignment programs如何处理这些信息？
alignment programs如何处理N填充haplotype/patch区域?

.toplevel - Includes haplotype information (not sure how aligners deal with this)，这些文件包含Ensembl模式中标记为顶层的所有序列区域。这包括染色体、未组装成染色体的区域和N填充haplotype/patch区域。

{width=400px}

• addition 1
• deletion 4
• Text with backticks inside


alt text

`

PASTE LOGS HERE

https://codesandbox.io/

• researcher
• iMeta
• 科研者之家
• biorender
• cd-genomics
• galaxyproject
• encodeproject
• 测试fastq
  点击下载

https://subtitlecomposer.kde.org/
https://chrome.google.com/webstore/detail/youtube-dual-subtitles/hkbdddpiemdeibjoknnofflfgbgnebcm?hl=zh-CN

https://zhuanlan.zhihu.com/p/363964528?ivk_sa=1024320u
https://ask.latexstudio.net/
https://beikolab.cs.dal.ca/software/STAMP
http://oss.bioinfo.online/9090/
https://www.jianshu.com/p/d4e0aaf5a9a6
https://idoc.pub/
https://kupdf.net/
https://oiipdf.com/
http://speech.ee.ntu.edu.tw/~tlkagk/courses.html
http://ocw.aca.ntu.edu.tw/ntu-ocw/ocw/coupage/1
https://www.w3cschool.cn/html5/bxieufld.html
https://www.mathjax.org/
https://www.bioinfo.info/?/question/3537
通过 CSS3DRenderer 实现全景浏览
【R语言】tidyverse之六：修改列
tidyverse之四：选择列
https://zhuanlan.zhihu.com/p/36346992
GDCRNATools: integrative analysis of protein coding genes, long non-coding genes, and microRNAs in GDC
https://www.jianshu.com/p/2689e9a1d10c
https://www.jianshu.com/p/9864be30ebce
https://cran.r-project.org/doc/FAQ/R-FAQ.html#How-can-I-get-eval_0028_0029-and-D_0028_0029-to-work_003f
https://www.jianshu.com/p/d5a64b9d6179
https://docs.docker.com/engine/install/ubuntu/
r-pkgs书籍
https://roxygen2.r-lib.org/articles/roxygen2.html
https://plotly.com/python/getting-started/
对Illumina高通量RNA测序数据分析的归一化方法的全面评估
综合评估RNA-seq数据的差异基因表达分析方法
R语言统计与绘图：ggsurvplot()函数绘制Kaplan-Meier生存曲线
富集分析不光有条带图和点图
rdrr.io
https://tding.top/archives/c363755b.html

• RPubs.com：你可以看到各式各样的基于R Markdown编译出来的网页报告
• OpenCPU：它是一个基于R的网络开发平台，例如这里有一个knitr应用,点点鼠标就可以动态生成一篇报告了
• CRUNCH：又一个基于R的计算与服务平台，也可以调用knitr生成报告（支持比OpenCPU更好）
• RCloud：基于Rserve包和knitr的网络应用，提供了一个可以合作编写报告的平台
• Vistat：基于GitHub/Jekyll的在线小刊物，主要演示统计图形以及相应的代码，背后的引擎仍然是knitr，用简单的+ Markdown就能生成一个漂亮有用的网站

https://www.rdocumentation.org/packages/knitr/versions/1.30/topics/render_html
https://bookdown.org/yihui/rmarkdown-cookbook/output-hooks.html
https://blog.csdn.net/weixin_33037313/article/details/112320233
https://blog.csdn.net/weixin_39556044/article/details/104048771
http://datasciencefree.com/advancedR.pdf
https://mirrors.tuna.tsinghua.edu.cn/help/ubuntu/
https://blog.csdn.net/luodong1501/article/details/106177355/

R in Action
R Graphics Cookbook
R for Data Science

• https://liulab-dfci.github.io/

• https://www.medsci.cn/sci/impact-index?id=a4ca11470

• 癌症药物敏感性基因组学

  • 找出耐药基因

• https://mirrors.tuna.tsinghua.edu.cn/help/bioconductor/

• 生物图片
  https://gemma.msl.ubc.ca/arrays/showArrayDesign.html?id=380
  ubuntu显卡安装
  https://zhuanlan.zhihu.com/p/59618999
  ubuntu截图
  https://blog.csdn.net/daerzei/article/details/84875573
  R面向对象
  https://dataxujing.github.io/R_oop/S4.html#s4
  pdf阅读
  https://getpolarized.io/download/
  https://unicode-table.com/cn/sets/numerals/
  Rsubread RNAseq处理

• Ⅰ、Ⅱ、Ⅲ、Ⅳ、Ⅴ、Ⅵ、Ⅶ、Ⅷ、Ⅸ、Ⅹ、Ⅺ、Ⅻ

• α β γ δ ε ζ Alpha Beta Gamma Delta Epsilon Zeta
  metap

• 边写边搜

• Broad Institute

• RNA-seq twitter

• Columbia Public Health Methods

• The Proceedings of the National Academy of Sciences (PNAS)

• ggcor在微生物分析中实战使用

• SeqIO
  https://mojaveazure.github.io/seurat-disk/articles/convert-anndata.html
  https://mathstat.slu.edu/~speegle/Spring2020/4870/_book/index.html

https://md.openwrite.cn/
https://www.latexlive.com/
846142081@qq.com
https://hbctraining.github.io/Intro-to-rnaseq-hpc-O2/lessons/03_alignment.html
https://serverok.in/install-visual-studio-code-server

https://github.com/SouthGreenPlatform/singularityRecipeFiles/blob/master/tophat-2.1.1.def
https://forgemia.inra.fr/gafl/singularity/htseq/-/blob/master/Singularity.htseq_v0.12.4

https://www.jianshu.com/p/949a4c7f9b26
https://gitlab.rlp.net/imbforge/sysops
https://genomics.sschmeier.com/ngs-mapping/index.html

http://adv-r.had.co.nz/S4.html

https://acutecaretesting.org/en/articles/roc-curves-what-are-they-and-how-are-they-used
https://blog.csdn.net/u013810234/article/details/121876649

https://smartkeyerror.com/Linux-Use-EasyConnect