rstudio容器的安装与使用

资源链接

• rstudio, tidyverse, verse, geospatial

以下命令需要确保docker已经安装，如果docker没有安装请参考这里安装

运行以下命令启动预装了tidyverse的rstudio容器

以命令行的方式运行

 docker run --rm -it  registry.cn-hangzhou.aliyuncs.com/wybioinfo/tidyverse:4.3 R

运行服务器版rstudio

docker run --rm \
	-p 8787:8787 \
	-e "DISABLE_AUTH=true" -e R_LIBS_USER=/home/rstudio/Rpackage \
	-v $PWD:/home/rstudio  -v $PWD/Rpackage:/home/rstudio/Rpackage \
	registry.cn-hangzhou.aliyuncs.com/wybioinfo/tidyverse:4.3

bioconductor安装

# bioconductor 镜像源
## https://www.bioconductor.org/about/mirrors/
# bioconductor安装
## https://bioconductor.org/install/
if(F){
  options(repos=structure(c(CRAN="https://mirrors.tuna.tsinghua.edu.cn/CRAN/")))
  options(BioC_mirror="https://mirrors.tuna.tsinghua.edu.cn/bioconductor")
  if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
  BiocManager::install(version = "3.18")
}