R使用mongodb

基本使用

sudo apt-get install libsasl2-dev

# ---mongodb
library(mongolite)
con <- mongo(collection = "differenceExpressGene",db = "bioinfo", url = "mongodb://localhost")
con$drop()
con$insert(DEG_df$resDF)
con$count()
dim(crc_mRNA_count_order)
str(DEG_df$resDF)
dds <- DESeqDataSetFromMatrix(countData = crc_mRNA_count_order,colData = crc_mRNA_sample,design = ~ group)
DESeqPlotPCA(dds)

head(DEG_df$resDF)
# -------------