R使用mongodb
最后发布时间:2021-04-28 00:00:22
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基本使用
sudo apt-get install libsasl2-dev
# ---mongodb
library(mongolite)
con <- mongo(collection = "differenceExpressGene",db = "bioinfo", url = "mongodb://localhost")
con$drop()
con$insert(DEG_df$resDF)
con$count()
dim(crc_mRNA_count_order)
str(DEG_df$resDF)
dds <- DESeqDataSetFromMatrix(countData = crc_mRNA_count_order,colData = crc_mRNA_sample,design = ~ group)
DESeqPlotPCA(dds)
head(DEG_df$resDF)
# -------------
