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Study Abbreviation	Study Name	翻译
TCGA-LAML	Acute Myeloid Leukemia	急性髓性白血病
TCGA-ACC	Adrenocortical carcinoma	肾上腺皮质癌
TCGA-BLCA	Bladder Urothelial Carcinoma	膀胱尿路上皮癌
TCGA-LGG	Brain Lower Grade Glioma	脑低级脑胶质瘤
TCGA-BRCA	Breast invasive carcinoma	乳腺浸润癌
TCGA-CESC	Cervical squamous cell carcinoma and endocervical adenocarcinoma	宫颈鳞状细胞癌和宫颈内膜腺癌
TCGA-CHOL	Cholangiocarcinoma	胆管癌
TCGA-LCML	Chronic Myelogenous Leukemia	慢性粒细胞性白血病
TCGA-COAD	Colon adenocarcinoma	结肠腺癌
TCGA-ESCA	Esophageal carcinoma	食道癌
TCGA-GBM	Glioblastoma multiforme	胶质母细胞瘤
TCGA-HNSC	Head and Neck squamous cell carcinoma	头颈部鳞状细胞癌
TCGA-KICH	Kidney Chromophobe	肾染色体
TCGA-KIRC	Kidney renal clear cell carcinoma	肾脏肾透明细胞癌
TCGA-KIRP	Kidney renal papillary cell carcinoma	肾肾乳头状细胞癌
TCGA-LIHC	Liver hepatocellular carcinoma	肝肝细胞癌
TCGA-LUAD	Lung adenocarcinoma	肺腺癌
TCGA-LUSC	Lung squamous cell carcinoma	肺鳞状细胞癌
TCGA-DLBC	Lymphoid Neoplasm Diffuse Large B-cell Lymphoma	淋巴样肿瘤弥漫性大B细胞淋巴瘤
TCGA-MESO	Mesothelioma	间皮瘤
TCGA-OV	Ovarian serous cystadenocarcinoma	卵巢浆液性囊腺癌
TCGA-PAAD	Pancreatic adenocarcinoma	胰腺腺癌
TCGA-PCPG	Pheochromocytoma and Paraganglioma	嗜铬细胞瘤和副神经节瘤
TCGA-PRAD	Prostate adenocarcinoma	前列腺腺癌
TCGA-READ	Rectum adenocarcinoma	直肠腺癌
TCGA-SARC	Sarcoma	肉瘤
TCGA-SKCM	Skin Cutaneous Melanoma	皮肤皮肤黑色素瘤
TCGA-STAD	Stomach adenocarcinoma	胃腺癌
TCGA-TGCT	Testicular Germ Cell Tumors	睾丸生殖细胞肿瘤
TCGA-THYM	Thymoma	胸腺瘤
TCGA-THCA	Thyroid carcinoma	甲状腺癌
TCGA-UCS	Uterine Carcinosarcoma	子宫癌肉瘤
TCGA-UCEC	Uterine Corpus Endometrial Carcinoma	子宫体子宫内膜癌
TCGA-UVM	Uveal Melanoma	葡萄膜黑色素瘤

测序数据分析流程

序列的比对和组装

定量和标准化

差异分析

TCGA数据下载

网页下载

R包

TCGA一般下载那种数据比较好呢？

TARGET数据下载

GTEx数据下载

TCGA和GTEx

参考