• RNA-seq测试数据

• https://github.com/nf-core/test-datasets

RNA-seq测试数据

https://github.com/nf-core/test-datasets/tree/rnaseq

• reference/: Sub-sampled genome reference files (iGenomes S. cerevisiae R64-1-1 Ensembl release)
• testdata/.fastq.gz: Historical single-end test data for pipeline sub-sampled to ~2000 reads testdata/GSE110004/.fastq.gz: Paired-end test data for pipeline sub-sampled to 50000 reads
• samplesheet/samplesheet.csv: Experiment design file for minimal test dataset
• samplesheet/samplesheet_full.csv: Experiment design file for full test dataset

S. cerevisiae 101bp paired-end strand-specific RNA-seq dataset was obtained from:

Andrew C K Wu, Harshil Patel, Minghao Chia, Fabien Moretto, David Frith, Ambrosius P Snijders, Folkert J van Werven. Repression of Divergent Noncoding Transcription by a Sequence-Specific Transcription Factor. Mol Cell. 2018 Dec 20;72(6):942-954.e7. doi: 10.1016/j.molcel.2018.10.018